Bibliography

Refereed Papers

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Vreeman DJ, McDonald CJ. Automated mapping of local radiology terms to LOINC. AMIA Annu Symp Proc [Internet]. 2005 [cited 2010 Jul 28];769–73. Available from: http://www.ncbi.nlm.nih.gov/pubmed/16779144 Download
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Vreeman DJ. Maintaining mappings from source systems in a local health information infrastructure. AMIA Annu Symp Proc. 2006;1131.
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Vreeman DJ, McDonald CJ. A comparison of Intelligent Mapper and document similarity scores for mapping local radiology terms to LOINC. AMIA Annu Symp Proc [Internet]. 2006 [cited 2010 Jul 28];809–13. Available from: http://www.ncbi.nlm.nih.gov/pubmed/17238453 Download
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Vreeman DJ, Taggard SL, Rhine MD, Worrell TW. Evidence for electronic health record systems in physical therapy. Phys Ther. 2006 Mar;86(3):434–46; discussion 446-449.
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Vreeman RC, Madsen KA, Vreeman DJ, Carroll AE, Downs SM. Compliance with guidelines for ADHD: a pilot study of an evaluation tool. J Pediatr. 2006 Oct;149(4):568–71.
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Vreeman DJ. Keeping up with changing source system terms in a local health information infrastructure: running to stand still. Stud Health Technol Inform. 2007;129(Pt 1):775–9.
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Vreeman DJ, Finnell JT, Overhage JM. A rationale for parsimonious laboratory term mapping by frequency. AMIA Annu Symp Proc [Internet]. 2007 [cited 2010 Jul 28];771–5. Available from: http://www.ncbi.nlm.nih.gov/pubmed/18693941
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Vreeman DJ, Stark M, Tomashefski GL, Phillips DR, Dexter PR. Embracing change in a health information exchange. AMIA Annu Symp Proc. 2008;768–72. Download
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Robbins CB, Vreeman DJ, Sothmann MS, Wilson SL, Oldridge NB. A review of the long-term health outcomes associated with war-related amputation. Mil Med. 2009 Jun;174(6):588–92.
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Lin M-C, Vreeman DJ, McDonald CJ, Huff SM. Correctness of Voluntary LOINC Mapping for Laboratory Tests in Three Large Institutions. AMIA Annu Symp Proc [Internet]. 2010 [cited 2012 Aug 19];447–51. Available from: http://www.ncbi.nlm.nih.gov/pubmed/21347018
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Vreeman DJ, McDonald CJ, Huff SM. Representing Patient Assessments in LOINC®. AMIA Annu Symp Proc [Internet]. 2010 [cited 2012 Aug 19];2010:832–6. Available from: http://www.ncbi.nlm.nih.gov/pubmed/21347095
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Wilkinson SG, Chevan J, Vreeman DJ. Establishing the Centrality of Health Informatics in Physical Therapist Education: If Not Now, When? Journal of Physical Therapy Education. 2010;24(3):10–5.
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Vreeman DJ, McDonald CJ, Huff SM. LOINC® - A Universal Catalog of Individual Clinical Observations and Uniform Representation of Enumerated Collections. Int J Funct Inform Personal Med. 2010;3(4):273–91.
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Sothmann M, Wilson SL, Vreeman DJ. Forming partnerships: Indiana-Ohio Center for Traumatic Amputation Rehabilitation Research. J Allied Health. 2010;39(4):301–5.
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Lin M-C, Vreeman DJ, Huff SM. Investigating the semantic interoperability of laboratory data exchanged using LOINC codes in three large institutions. AMIA Annu Symp Proc [Internet]. 2011 [cited 2012 Aug 19];805–14. Available from: http://www.ncbi.nlm.nih.gov/pubmed/22195138
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Lin MC, Vreeman DJ, McDonald CJ, Huff SM. A characterization of local LOINC mapping for laboratory tests in three large institutions. Methods Inf Med [Internet]. 2011 [cited 2012 Aug 19];50(2):105–14. Available from: http://www.ncbi.nlm.nih.gov/pubmed/20725694
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Rajda J, Vreeman DJ, Wei HG. Semantic interoperability of Health Risk Assessments. AMIA Annu Symp Proc [Internet]. 2011 [cited 2012 Aug 19];2011:1134–43. Available from: http://www.ncbi.nlm.nih.gov/pubmed/22195174
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Gichoya J, Gamache RE, Vreeman DJ, Dixon BE, Finnell JT, Grannis S. An evaluation of the rates of repeat notifiable disease reporting and patient crossover using a health information exchange-based automated electronic laboratory reporting system. AMIA Annu Symp Proc. 2012;2012:1229–36.
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Gamache RE, Dixon BE, Grannis S, Vreeman DJ. Impact of selective mapping strategies on automated laboratory result notification to public health authorities. AMIA Annu Symp Proc. 2012;2012:228–36.
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Pan H, Tryka KA, Vreeman DJ, Huggins W, Phillips MJ, Mehta JP, et al. Using PhenX measures to identify opportunities for cross-study analysis. Hum Mutat [Internet]. 2012 May [cited 2012 Aug 19];33(5):849–57. Available from: http://www.ncbi.nlm.nih.gov/pubmed/22415805
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Lin MC, Vreeman DJ, McDonald CJ, Huff SM. Auditing consistency and usefulness of LOINC use among three large institutions - Using version spaces for grouping LOINC codes. J Biomed Inform [Internet]. 2012 Aug [cited 2012 Aug 19];45(4):658–66. Available from: http://www.ncbi.nlm.nih.gov/pubmed/22306382
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Vreeman DJ, Chiaravalloti MT, Hook J, McDonald CJ. Enabling international adoption of LOINC through translation. J Biomed Inform [Internet]. 2012 Aug [cited 2012 Aug 19];45(4):667–73. Available from: http://www.ncbi.nlm.nih.gov/pubmed/22285984
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Kroth PJ, Daneshvari S, Harris EF, Vreeman DJ, Edgar HJH. Using LOINC to link 10 terminology standards to one unified standard in a specialized domain. J Biomed Inform [Internet]. 2012 Aug [cited 2012 Aug 19];45(4):674–82. Available from: http://www.ncbi.nlm.nih.gov/pubmed/22036696
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Wu J, Finnell JT, Vreeman DJ. Evaluating Congruence Between Laboratory LOINC Value Sets for Quality Measures, Public Health Reporting, and Mapping Common Tests. AMIA Annu Symp Proc. 2013;2013:1525–32.
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Fidahussein M, Vreeman DJ. A corpus-based approach for automated LOINC mapping. J Am Med Inform Assoc. 2013 May 15; Download
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Vreeman DJ, Richoz C. Possibilities and Implications of Using the ICF and Other Vocabulary Standards in Electronic Health Records. Physiother Res Int. 2013 Jul 30;
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Dixon BE, Vreeman DJ, Grannis SJ. The Long Road to Semantic Interoperability in Support of Public Health: Experiences from Two States. J Biomed Inform. 2014 Mar 25; Download
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Dixon BE, Hook J, Vreeman DJ. Learning From the Crowd in Terminology Mapping: The LOINC Experience. Lab Med. 2015;46(2):168–74. Download
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Deckard J, McDonald CJ, Vreeman DJ. Supporting interoperability of genetic data with LOINC. J Am Med Inform Assoc. 2015 Feb 5; Download
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Vreeman DJ, Hook J, Dixon BE. Learning from the crowd while mapping to LOINC. J Am Med Inform Assoc. 2015 Nov;22(6):1205–11. Download
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Wang KC, Patel JB, Vyas B, Toland M, Collins B, Vreeman DJ, et al. Use of Radiology Procedure Codes in Health Care: The Need for Standardization and Structure. Radiographics. 2017 Aug;37(4):1099–110. Download
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Hosseini M, Jones J, Faiola A, Vreeman DJ, Wu H, Dixon BE. Reconciling Disparate Information in Continuity of Care Documents: Piloting a System to Consolidate Structured Clinical Documents. J Biomed Inform. 2017 Sep 10; Download
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Campbell WS, Karlsson D, Vreeman DJ, Lazenby AJ, Talmon GA, Campbell JR. A computable pathology report for precision medicine: extending an observables ontology unifying SNOMED CT and LOINC. J Am Med Inform Assoc. 2017 Sep 13; Download
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Beitia AO, Lowry T, Vreeman DJ, Loo GT, Delman BN, Thum FL, et al. Standard Anatomic Terminologies: Comparison for Use in a Health Information Exchange-Based Prior Computed Tomography (CT) Alerting System. JMIR Med Inform. 2017 Dec 14;5(4):e49. Download
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Vreeman DJ, Abhyankar S, Wang KC, Carr C, Collins B, Rubin DL, et al. The LOINC RSNA radiology playbook - a unified terminology for radiology procedures. J Am Med Inform Assoc. 2018 May 29; Download
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Bodenreider O, Cornet R, Vreeman DJ. Recent Developments in Clinical Terminologies - SNOMED CT, LOINC, and RxNorm. Yearb Med Inform. 2018 Aug;27(1):129–39. Download
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Zhang XA, Yates A, Vasilevsky N, Gourdine JP, Callahan TJ, Carmody LC, et al. Semantic integration of clinical laboratory tests from electronic health records for deep phenotyping and biomarker discovery. NPJ Digit Med. 2019;2. Download

Letters to the Editor

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Vreeman DJ. Clinical prediction rules. Phys Ther. 2006 May;86(5):761–2.
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McDonald CJ, Vreeman DJ, Abhyankar S. Comment on “time to integrate clinical and research informatics.” Sci Transl Med. 2013 Apr 3;5(179):179le1.
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Vreeman DJ, Abhyankar S, McDonald CJ. Re: Unit conversions between LOINC codes Published June 19, 2017. J Am Med Inform Assoc. 2017 Aug 23; Download
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Abhyankar S, Vreeman DJ, Westra BL, Delaney CW. Letter to the Editor-Comments on the Use of LOINC and SNOMED CT for Representing Nursing Data. Int J Nurs Knowl. 2017 Aug 30; Download

Refereed Presentations and Abstracts

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Vreeman RC, Madsen KA, Vreeman DJ, Downs SM. Evaluating Compliance with Guidelines for ADHD Diagnosis and Treatment. Pediatric Academic Societies’ Meeting; 2004; San Francisco, CA.
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Vreeman DJ, Taggard SL, Rhine MD, Worrell TW. Implementation of Electronic Health Record Systems in Physical Therapy - A Systematic Review. APTA Annual Conference 2005; 2005; Boston, MA.
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Vreeman DJ, Taggard SL. On the Road to a National Health Information Network: Implications for Physical Therapy. APTA Combined Sections Meeting 2006; 2006; San Diego, CA.
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Vreeman DJ. Maintaining mappings from source systems in a local health information infrastructure. AMIA Annual Symposium Proceedings 2006; 2006; Washington, DC.
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Vreeman DJ, Eng J, Herbold J. Using Information Technology to Develop and Implement Evidence-based Practice. APTA Combined Sections Meeting 2007; 2007; Boston, MA.
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Robbins CB, Oldridge NB, Sothmann MS, Vreeman DJ, Wilson S. Creating the Indiana - Ohio Center for Traumatic Amputation Rehabilitation Research. 12thWorld Congress of the International Society for Prosthetics and Orthotics 2007; 2007; Vancouver, BC Canada.
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Robbins CB, Morley S, Oldridge NB, Sothmann MS, Vreeman DJ, Wilson S. Creating the Indiana-Ohio Center for Traumatic Amputation Rehabilitation Research – Findings from an Initial Survey. 10th Annual Force Health Protection Conference; 2007; Louisville, KY.
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Vreeman DJ, Herbold J, Hall M, Brooks G. Information Technology in Physical Therapy - A Journey, Not a Destination. APTA Combined Sections Meeting 2008; 2008; Nashville, TN.
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Robbins C, Sothmann M, Wilson S, Vreeman DJ. Examining the Long-Term Health Outcomes of Traumatic Amputation to Better Educate Young War Veterans. Eighth Annual American Academy of Health Behavior Conference 2008; 2008; Oxnard, CA.
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Vreeman DJ, Robbins CB, Oldridge NB, Wilson S, Sothmann MS. Creating an Informatics Infrastructure to Support a Participant Registry and Outcomes Research in the Indiana - Ohio Center for Traumatic Amputation Rehabilitation Research. APTA Annual Conference 2008; 2008; San Antonio, TX.
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Robbins C, MacKinnon J, Oldridge N, Sothmann M, Wilson S, Vreeman DJ. Indiana - Ohio Center:  Long-terms outcomes of war-related traumatic amputations. AcademyHealth 2008 Annual Research Meeting; 2008; Washington, DC.
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Vreeman DJ. An informatics infrastructure supporting outcomes research in the Indiana - Ohio Center for Traumatic Amputation Rehabilitation Research. ATA Annual Conference 2009, Las Vegas, NV, April 2009.; 2009; Las Vegas, NV.
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McDonald CJ, Fung KW, Wang Y, Lynch P, Hook J, Vreeman DJ. Towards a standardized HL7 clinical data capture tool - a trial implementation in the US National Library of Medicine’s Personal Health Record. 10thInternational HL7 Interoperability Conference; 2009; Kyoto, Japan.
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Bircher S, Latz R, Chong Lee A, Timmerberg J, Vreeman DJ. Expert panel: The Effect of Technology on Vision 2020 - The Train is Leaving the Station and We are Asking You to Please Get on Now. APTA Combined Sections Meeting 2010; 2010; San Diego, CA.
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Grannis SJ, Vreeman DJ. Notifiable case detection systems are dependent upon maintaining value sets. Indiana Center of Excellence in Public Health Informatics 2010 Symposium; 2010; Indianapolis, IN.
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Vreeman DJ. Are you ready for EHRs? Chicken soup or rotten egg? APTA Annual Conference 2011; 2011; National Harbor, MD.
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Vreeman DJ. Meaningful Use Messaging and Vocabulary Standards: Licensing and Redistribution Challenges - LOINC. Public Health Informatics 2011 Conference; 2011; Atlanta, GA.
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Vreeman DJ. LOINC: An Introduction to the Universal Catalog of Laboratory and Clinical Observations. Public Health Informatics 2011 Conference; 2011; Atlanta, GA.
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Vreeman DJ. Multi-Stakeholder Collaborative Development, Usage and Maintenance of ELR Reportable Condition Mapping Table (RCMT) - LOINC. Public Health Informatics 2011 Conference; 2011; Atlanta, GA.
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Hamilton CM, Pan H, Huggins W, Phillips MJ, Strader LC, Tryka KA, et al. The PhenX Toolkit: Enhancing Cross-study Analysis in Genomic Studies. The 12th  International Meeting on Human Genome Variation and Complex Genome Analysis; 2011; Berkley, CA.
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Chiaravalloti MT, Vreeman DJ. LOINC Learns to Speak Italian: Translation and Mapping of LOINC in Italy. AMIA Annual Symposium 2011; 2011; Washington, DC.
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Vreeman DJ, Elrod M, Latz R, Wilkinson SG. Electronic Health Records - health care system chicken soup or rotten egg. APTA Combined Sections Meeting 2012; 2012; Chicago, IL.
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Escorpizo R, Bemis-Dougherty A, Davenport T, Feliciano H, Vreeman DJ, Riddle DL. The ICF and Physical Therapy: 10 years later. APTA Combined Sections Meeting 2012; 2012; Chicago, IL.
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Vreeman DJ. LOINC and SNOMED CT. NOMED CT Implementation Showcase; 2013; Arlington, VA.
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Latz R, Vreeman DJ. Integrating Technology into Specialty Practice. APTA Combined Sections Meeting 2015; 2015; Indianapolis, IN.
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Vreeman DJ. LOINC: Approaches to LOINC Adoption Around the Globe. Medinfo 2015,15th World Congress on Health and Biomedical Informatics; 2015; Brazil.
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Vreeman DJ. LOINC: International Perspectives and Strategies for LOINC Adoption. Medinfo 2015, 15th World Congress on Health and Biomedical Informatics; 2015; Brazil.
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Vreeman DJ. Guidelines for Using LOINC and SNOMED CT Together. International Health Terminology Standards Development Organization (IHTSDO); 2015; Montevideo, Uraguay.
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Vreeman DJ. Squaring The Circle: Managing local healthcare terminologies in the age of standardization. AMIA Annual Symposium Panel, San Francisco, CA, Nov. 2015.; 2015; San Francisco, CA.
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Abhyankar S, Deckard J, Armson S, Vreeman DJ. LOINCing for Precision Medicine. Regenstrief Institute Conference 2016; 2016; Turkey Run, IN.
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Beitia A, Lowery T, Vreeman DJ, Delman B, Slovis B, Loo G, et al. Constructing Diagnostic CT Exam Lists for Sites across an HIE. AMIA Annual Symposium 2016.; 2016; Chicago, IL.
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McDonald CJ, Lynch P, Ludet C, Mericle L, Hook J, Vreeman DJ, et al. NLM - Forms: a “well-connected” data capture widget and sister modules for capturing and tuning health data. AMIA Annual Symposium 2016; 2016; Chicago, IL.
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Vreeman DJ, Armson SA, Abhyankar SA. Best practices for using LOINC in Commercial HIT Systems. LOINC in Commercial HIT Systems. LTPAC HIT; 2017; Baltimore, MD.
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Vreeman DJ, Armson A. LOINC for assessment instruments. LTPAC HIT 2017; 2017; Baltimore, MD.
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Vreeman DJ. Introduction to LOINC, the global vocabulary for tests, measurements, and observations in healthcare. MedInfo 2017; 2017; Hangzhou, China.
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Vreeman DJ, Wang K, Carr C, Collins B, Abhyankar S, Deckard J, et al. The LOINC/RSNA Radiology Playbook: A unified terminology for radiology procedures. AMIA Annual Symposium 2017; 2017; Washington, DC.
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Vreeman DJ, Abhyankar SA. Tutorial: Introduction to LOINC. AMIA Annu Symp, Washington, DC, Nov. 2017.; 2017; Washington, DC.
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Taylor A, Vreeman DJ, Puro J, Verzola M. Panel: Social and Behavioral Determinants of Health: Fundamental Informatics Challenges for Enriching Health IT Systems. AMIA Annual Symposium 2017; 2017; Washington, DC.
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Beitia A, Lowry T, Vreeman DJ, Delman B, Loo G, Thum III F, et al. Mapping CT Codes from a Health Information Exchange to LOINC. AMIA Annual Symposium 2017; 2017; Washington, DC.
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Allen K, Armson S, Vreeman DJ. Poster: SDOH in INPC. AMIA Annual Symposium 2017; 2017; Washington, DC.
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Abhyankar S, Schluter P, Bennett K, Vreeman DJ, McDonald CJ. Enabling Interoperability between Healthcare Devices and EHR Systems. AMIA Annual Symposium 2017; 2017; Washington, DC.
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Hoover J, Kluding P, Vreeman DJ, Waitman L. Partnering With Informatics to Enhance Participant Recruitment for Trials. APTA Combined Sections Meeting 2018; 2018; New Orleans, LA.
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Beitia A, Lowery T, Vreeman DJ, Delman B, Loo G, Thum F, et al. Poster: Mapping of HIE CT Codes to LOINC - Analysis of Inconclusive Codes and Quantification of Mapping Times. AMIA 2018 Informatics Summit 2018; 2018; San Francisco, CA.
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Vreeman DJ, Abhyankar S. Introduction to LOINC: The global vocabulary for identifying health measurements, observations, and documents. AMIA Annual Symposium; 2018; San Francisco, CA.
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Abhyankar S, Zabriskie M, Hook J, Briscoe T, Finnell JT, Vreeman DJ. LOINC Groups: A novel tool for data aggregation. AMIA Annual Symposium 2018; 2018; San Francisco, CA.
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Vreeman DJ, Hook J, Briscoe T, Abhyankar S. Improving Mapping Accuracy with a Guide for LOINC Microbiology Terms. AMIA Annual Symposium 2018; 2018; San Francisco, CA.
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Vreeman DJ, Zabriskie M, Abhyankar S, Allen K. Improving LOINC Mapping through Targeted Subsets. AMIA Annual Symposium 2018; 2018; San Francisco, CA.
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Zhang XA, Yates A, Vasilevsky N, Gourdine JP, Carmody LC, Danis D, et al. Semantic Integration of Clinical Laboratory Tests from Electronic Health Records for Deep Phenotyping and Biomarker Discovery. AMIA 2019 Informatics Summit; 2019; San Francisco, CA.

Books, Chapters, and Reference Texts

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Giannagelo K. Healthcare Code Sets, Clinical Terminologies, and Classification Systems [Internet]. 2nd ed. Chicago, IL: American Health Information Management Association; 2010. 151–164 p. (Chapter 10, Logical Observation Identifiers, Names, and Codes (LOINC®)). Available from: https://amzn.to/2PqxCoO
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Regenstrief Institute, Inc. LOINC Mapper’s Guide to the Top 2000+ Lab Observations. [Internet]. 2012. Available from: https://loinc.org
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Health Level 7 (HL7) International. HL7 Implementation Guide: LOINC Document Ontology, Release 1 [Internet]. 2015 [cited 2018 Jul 4]. Available from: http://www.hl7.org/implement/standards/product_brief.cfm?product_id=402 Download
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Finnell J, Dixon B, editors. Clinical Informatics Study Guide: Text and Review [Internet]. Switzerland: Springer International Publishing; 2016. 536 p. (Chapter: Healthcare Data Standards and Exchange). Available from: https://amzn.to/2Ck1eCS
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Vreeman DJ. LOINC Essentials [Internet]. 1.0. Blue Sky Premise, LLC; 2016. 259 p. Available from: https://danielvreeman.com/loinc-essentials
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McDonald CJ, Huff SM, Deckard J, Armson S, Abhyankar S, Vreeman DJ, editors. LOINC Users’ Guide [Internet]. LOINC 2.64, Users Guide 2.64. 2018. Available from: https://loinc.org/download/loinc-users-guide/
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Abhyankar S, Zabriskie M, Baorto D, Vreeman DJ. Guide for Using LOINC Microbiology Terms [Internet]. Regenstrief Institute, Inc.; 2018. Available from: https://loinc.org/guides/micro/